Hello Martin, the application protection and pass only protection were features of Espionage 2, and are not present in Espionage 3 due to changes in how OS X works. So if you really need those features then you would need to use Espionage 2. You can read about Espionage 2 at www.taoeffect.com and about Espionage 3 at www.espionageapp.com
Once you decided which one to you, let me know and we can probably convert your license to Espionage 2 if this is what you want.
Rgds
Zsolt